Publications

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Pre-prints

"Extensile to contractile transition in active microtubule-actin composites generates layered asters with programmable lifetimes"
John Berezney, Bruce L. Goode, Seth Fraden, Zvonimir Dogic (2021)
[Arxiv]

"Active microphase separation in mixtures of microtubules and tip-accumulating molecular motors"
Bezia Lemma, Noah P. Mitchel, Radhika Subramanian, Daniel J. Needleman, Zvonimir Dogic (2021)
[Arxiv]

"Assembling microtubule-based active matter"
Alexandra M. Tayar, Linnea M. Lemma, Zvonimir Dogic (2021)
[PDF]

"Defect-mediated dynamics of coherent structures in active nematics"
Mattia Serra, Linnea Lemma, Luca Giomi, Zvonimir Dogic, L. Mahadevan (2021)
[Arxiv]

"Microtubule-based active fluids with improved lifetime, temporal stability and miscibility with passive soft materials"
Pooja Chandrakar, John Berezney, Bezia Lemma, Bernard Hishamunda, Angela Berry, Kun-Ta Wu, Radhika Subramanian, Johnson Chung, Daniel Needleman, Jeff Gelles, Zvonimir Dogic (2018)
[Arxiv]


2021

"Multiscale microtubule dynamics in active nematics"
Linnea M. Lemma, Michael M. Norton, Alexandra M. Tayar, Stephen J. DeCamp, S. Ali Aghvami, Seth Fraden, Michael F. Hagan, Zvonimir Dogic
Phys. Rev. Lett. (2021)
[Web][PDF]

"Active liquid crystals powered by force-sensing DNA-motor clusters"
Alexandra M. Tayar, Michael F. Hagan, Zvonimir Dogic
PNAS (2021)
[Web][PDF]

"Machine learning active-nematic hydrodynamics"
Jonathan Colen, Ming Han, Rui Zhang, Steven A. Redford, Linnea M. Lemma, Link Morgan, Paul V. Ruijgrok, Raymond Adkins, Zev Bryant, Zvonimir Dogic, Margaret L. Gardel, Juan J. de Pablo, Vincenzo Vitelli
PNAS (2021) [Web][PDF]

"Static adhesion hysteresis in elastic structures"
Edvin Memet, Feodor Hilitski, Zvonimir Dogic, L. Mahadevan
Soft Matter (2021) [Web][PDF]

2020

"Confinement controls the bend instability of three-dimensional active liquid crystals"
Pooja Chandrakar, Minu Varghese, S.Ali Aghvami, Aparna Baskaran, Zvonimir Dogic, Guillaume Duclos
Phys. Rev. Lett. (2020) [Web][PDF]

"Machine learning forecasting of active nematics"
Zhengyang Zhou, Chaitanya Joshi, Ruoshi Liu, Michael M. Norton, Linnea Lemma, Michael F. Hagan, Seth Fraden, Pengyu Hong
Soft Matter (2020) [Web][PDF]

"Shear-induced gelation of self-yielding active networks"
David A. Gagnon, Claudia Dessi, John P. Berezney, Remi Boros, Daniel T.-N. Chen, Zvonimir Dogic, Daniel L. Blair
Phys. Rev. Lett. (2020) [Web][PDF]

"All twist and no bend makes raft edges splay: Spontaneous curvature of domain edges in colloidal membranes"
Joia M. Miller, Doug Hall, Joanna Robaszewski, Prerna Sharma, Michael F. Hagan, Gregory M. Grason, Zvonimir Dogic
Science Advances (2020) [Web][PDF]

"Force-induced formation of twisted chiral ribbons"
Andrew Balchunas, Leroy L. Jia, Mark J. Zakhary, Joanna Robaszewski, Thomas Gibaud, Zvonimir Dogic, Robert A. Pelcovits, Thomas R. Powers
Phys. Rev. Lett. (2020) [Web][PDF]

"Topological structure and dynamics of three-dimensional active nematics"
Guillaume Duclos, Raymond Adkins, Debarghya Banerjee, Matthew S. E. Peterson, Minu Varghese, Itamar Kolvin, Arvind Baskaran, Robert A. Pelcovits, Thomas R. Powers, Aparna Baskaran, Federico Toschi, Michael F. Hagan, Sebastian J. Streichan, Vincenzo Vitelli, Daniel A. Beller, Zvonimir Dogic
Science (2020) [Web][PDF]

2019

"Self-straining of actively crosslinked microtubule networks"
Sebastian Fürthauer, Bezia Lemma, Peter J. Foster, Stephanie C. Ems-McClung, Che-Hang Yu, Claire E. Walczak, Zvonimir Dogic, Daniel J. Needleman, Michael J. Shelley
Nature Physics (2019) [Web][PDF]

"Structure, dynamics and phase behavior of short rod inclusions dissolved in a colloidal membrane"
Mahsa Siavashpouri, Prerna Sharma, Jerome Fung, Michael F. Hagan, Zvonimir Dogic
Soft Matter (2019) [Web][PDF]

"Equation of state of colloidal membranes"
Andrew J. Balchunas, Rafael A. Cabanas, Mark J. Zakhary, Thomas Gibaud, Seth Fraden, Prerna Sharma, Michael F. Hagan, Zvonimir Dogic
Soft Matter (2019) [Web][PDF]

"Statistical Properties of Autonomous Flows in 2D Active Nematics"
Linnea M Lemma, Stephen J Decamp, Zhihong You, Luca Giomi, Zvonimir Dogic
Soft Matter (2019) [Web][PDF]

"Conformational switching of chiral colloidal rafts regulates raft-raft attractions and repulsions"
Joia Miller, Chaitanya Joshi, Prerna Sharma, Aparna Baskaran, Gregory M. Grason, Michael F. Hagan, Zvonimir Dogic
PNAS 116 (32) 15792-15801 (2019)[Web][PDF]

"Self-organized dynamics and the transition to turbulence of confined active nematics"
Achini Opathalage, Michael M. Norton, Michael P. N. Juniper, Blake Langeslay, S. Ali Aghvami, Seth Fraden, and Zvonimir Dogic
PNAS 116 (11) 4788-4797 (2019) [Web][PDF]


2018

"Microtubules soften due to cross-sectional flattening"
Edvin Memet, Feodor Hilitski, Margaret A. Morris, Walter J. Schwenger, Zvonimir Dogic, and L. Mahadevan
eLife, 34695 (2018) [Web][PDF]


2017

"Chiral edge fluctuations of colloidal membranes"
Leroy L. Jia, Mark J. Zakhary, Zvonimir Dogic, Robert A. Pelcovits, and Thomas R. Powers
Phys. Rev. E 95, 060701(R) (2017) [Web][PDF]

"Active matter at the interface between materials science and cell biology"
Daniel Needleman and Zvonimir Dogic
Nature Reviews Materials 2, Article number: 17048 (2017) [Web][PDF]

"Molecular engineering of chiral colloidal liquid crystals using DNA origami"
Mahsa Siavashpouri, Christian H. Wachauf, Mark J. Zakhary, Florian Praetorious, Hendrik Dietz and Zvonimir Dogic
Nature Materials (2017). [Web][PDF]

"Stucture and Intermolecular Interactions between L-Type Straight Flagellar Filaments"
Daniel Louzon, Avi Ginsburg, Walter Schwenger, Tom Dvir, Zvonimir Dogic and Uri Raviv
Biophysical Journal, 112, 2183 (2017). [Web][PDF]

"Achiral symmetry breaking and positiive Gaussian modulus lead to scalloped colloidal membranes"
Thomas Gibuad, C. Nadir Kaplan, Prerna Sharma, Mark. J. Zakhary, Rudolf Oldenbourg, Robert. B. Meyer, Randall D Kamien, Thomas R. Powers and Zvonimir Dogic
PNAS 333, E3376 (2017). [Web][PDF]

"Transition from turbulent to coherent flows in confined three-dimensional active fluids"
Kun-Ta Wu, Jean Bernard Hishamunda, Daniel T. N. Chen, Stephen J. DeCamp, Ya-Wen Chang, Alberto Fernandez-Nieves, Seth Fraden, Zvonimir Dogic
Science 355, eaal1979 (2017) [Web][PDF]


2016

"Filamentous phages as a model system in soft matter physics"
Zvonimir Dogic
Frontiers in Microbiology (2016). [Web][PDF]

"Entropic forces stabilize diverse emergent structures in colloidal membranes"
L. Kang, T. Gibaud, Z. Dogic, T. C. Lubensky
Soft Matter, 12, 386-401 (2016). [Web][PDF]

"Entropic forces drive contraction of cytoskeletal networks"
Marcus Braun, Zdenek Lansky, Feodor Hilitski, Zvonimir Dogic and Stefan Diez
BioEssays (2016). [Web][PDF]


2015

"ATP Consumption of Eukaryotic Flagella Measured at a Single-Cell Level"
Daniel T. N. Chen, M. Heymann, S. Fraden, D. Nicastro and Z. Dogic
Biophysical Journal, 109, 2562-2573 (2015). [Web][PDF]

"Trains, tails and loops of partially adsorbed semi-flexible filaments"
David Welch, M. P. Lettinga, Marisol Ripoll, Zvonimir Dogic and Gerard A. Vliegenthart
Soft Matter, 11, 7507-7514 (2015). [Web][PDF][arXiv]

"Orientational order of motile defects in active nematics"
Stephen J. Decamp, Gabriel S. Redner, Aparna Baskaran, Michael. F. Hagan and Zvonimir Dogic
Nature Materials, 14, 1110-1115 (2015). [Web][PDF]

"Solid friction between soft filaments"
Andrew Ward, Feodor Hilitski, Walter Schwenger, David Welch, A. W. C. Lau, Vincenzo Vitelli, L. Mahadevan and Zvonimir Dogic
Nature Materials, 14, 583-588 (2015). [Web][PDF]

"Measuring cohesion between macromolecular filaments, one pair at a time: Depletion-induced microtubule binding"
Feodor Hilitski, Andrew R. Ward, Luis Cajamarca, Michael F. Hagan, Gregory M. Grason and Zvonimir Dogic
Phys. Rev. Lett, 114, 138102 (2015). [Web][PDF]


2014

"Tunable dynamics of microtubule-based active isotropic gels"
Gil Henkin, Stephen J. DeCamp, Daniel T. N. Chen, Tim Sanchez and Zvonimir Dogic
Philosophical Transactions of the Royal Society A 372 (2014). [Web][PDF]

"Hierarchical organization of chiral rafts in colloidal membranes"
Prerna Sharma, Andrew Ward, T. Gibaud, Michael F. Hagan and Zvonimir Dogic
Nature 514, 77-80 (2014). [Web][PDF]

"Topology and dynamics of active nematic vesicles"
Felix C. Keber, Etienne Loiseau, Tim Sanchez, Stephen J. DeCamp, Luca Giomi, Mark J. Bowick, M. Cristina Marchetti, Zvonimir Dogic and Andreas R. Bausch
Science 345, 1135-1139 (2014). [Web][PDF]

"Imprintable membranes from incomplete chiral coalescence"
Mark J. Zakhary, Thomas Gibaud, C. Nadir Kaplan, Edward Barry, Rudolf Oldenbourg, Robert B. Meyer and Zvonimir Dogic
Nature Communications 5, 3063 (2014). [Web][PDF]

"Hypercomplex Liquid Crystals"
Zvonimir Dogic, Prerna Sharma and Mark J. Zakhary
Annual Review of Condensed Matter Physics 5, 137-57 (2014). [Web][PDF]


2013

"Engineering Oscillating Microtubule Bundles"
Tim Sanchez and Zvonimir Dogic
Methods in Enzymology 524, 205-226 (2013). [PDF]

"Geometrical edgeactants control interfacial bending rigidity of colloidal membranes"
Mark J. Zakhary, Prerna Sharma, Andrew Ward, Sevim Yardimici and Zvonimir Dogic
Soft Matter 9, 8306-8313 (2013). [Web][PDF]


2012

"Spontaneous motion in hierarchically assembled active matter"
Tim Sanchez, Daniel T. N. Chen, Stephen J. DeCamp, Michael Heymann and Zvonimir Dogic
Nature 491, 431-434 (2012). [PDF][Supp.] See commentary by Marchetti [PDF]

"Reconfigurable Self-Assembly through chiral control of interfacial tension"
T. Gibaud, E. Barry, M. Zakhary, M. Henglin, A. Ward, Y. Yang, C. Berciu, R. Oldenbourg, D. Nicastro, R. Meyer and Z. Dogic
Nature 481, 348-351(2012). [PDF]See commentary by Schaller and Bausch [PDF]

"Self-assembly of 2D membranes from mixtures of hard rods and depleting polymers"
Y. Yang, E. Barry. Z. Dogic and M. F. Hagan
Soft Matter 8, 707-714 (2012). [PDF]


2011

"Cilia-Like Beating of Active Microtubule Bundles"
T. Sanchez, D. Welch, D. Nicastro and Z. Dogic
Science 333, 456-459 (2011). [PDF][Supp.]


2010 and earlier
2010

"Entropy Driven Self-Assembly of Non-Amphiphilic Colloidal Membranes"
E. Barry and Z. Dogic
PNAS 107, 10348-10353 (2010). [PDF][Supp.] 2010 Cozzereli Prize from National Academy of Sciences

"Adenomatus polyposis coli protein nucleates actin assembly and synergizes with formin mDia1"
K. Okada, F. Bartolini, A. M. Deaconescu, J. B. Moseley, Z. Dogic, N. Grigorieff, G. G. Gundersen and B. L. Goode
J. Biol. Chem. 189, 1087-1096 (2010). [PDF][Supp.]

"Circularization, photo-mechanical switching and a supercoiling transition of actin filaments"
T. Sanchez, I. Kulic and Z. Dogic
Phys. Rev. Lett. 104, 098103 (2010). [PDF]

2009

"An active biopolymer network controlled by molecular motors"
G. H. Koenderink GH, Z. Dogic Z, F. Nakamura F, P. M. Bendix, F. C. MacKintosh, J. H. Hartwig, T. P. Stossel and D. A. Weitz
PNAS 106, 15192-15197 (2009). [PDF][Supp.]

"Condensation of isolated semi-flexible filaments driven by depletion interactions"
A. W. C. Lau, A. Prasad and Z. Dogic
EPL 87, 48006 (2009). [PDF]

"A model liquid crystalline system based on rodlike viruses with variable chirality and persistence length"
E. Barry E, D. Beller and Z. Dogic
Soft Matter 5, 2563-2570 (2009). [PDF]

"Pair Potential of Charged Colloidal Stars"
F. Huang, K. Addas, A. Ward A, T. N. Flynn, E. Velasco, M. F. Hagan, Z. Dogic and S. Fraden
Phys. Rev. Lett. 102, 108302 (2009). [PDF]

"Direct Measurement of the Twist Penetration Length in a Single Smectic A Layer of Colloidal Virus Particles"
E. Barry, Z. Dogic , R. B. Meyer, R. A. Pelcovits and R. Oldenbourg
J. of Phys. Chem. B 113, 3910-3913 (2009). [PDF]

2008

"A quantitative analysis of contractility in active cytoskeletal protein networks"
P. M. Bendix, G. J. Koenderink, D. Cuvelier, Z. Dogic, B. M. Koeleman, W. M. Brieher, C. M. Field, L. Mahadevan and D. A. Weitz
Biophys. J. 94, 3126-3136 (2008). [PDF][Supp.]

2007

"Bending dynamics of fluctuating biopolymers probed by automated high-resolution filament tracking"
C. P. Brangwynne CP, G. H. Koenderink, E. Barry, Z. Dogic, F. C. MacKintosh and D. A. Weitz
Biophys. J. 93, 346-359 (2007). [PDF]

2006

"Vorticity banding in rodlike virus suspensions"
K. G. Kang, M. P. Lettinga, Z. Dogic, J. K. G. Dhont
Phys. Rev. E 74, 026307 (2006). [PDF]

"Counterion-mediated attraction and kinks on loops of semiflexible polyelectrolyte bundles"
A. Cebers, Z. Dogic Z, P. A. Janmey
Phys. Rev. Lett. 96, 247801 (2006). [PDF]

"Ordered phases of filamentous viruses"
Z. Dogic and S. Fraden
Curr. Opinion in Coll. and Inter. Sci. 11, 47-55 (2006). [PDF]

"Entropy-driven formation of a chiral liquid-crystalline phase of helical filaments"
E. Barry E, Z. Hensel Z, Z. Dogic, M. Schribak and R. Oldenbourg
Phys. Rev. Lett. 96, 018305 (2006). [PDF]

2005

"Flow behavior of colloidal rodlike viruses in the nematic phase"
E.M. P. Lettinga, Z. Dogic, H. Wang and J. Vermant
Langmuir 21, 8048-8057 (2005). [PDF]

"Self-diffusion of rod-like viruses in the nematic phase"
M. P. Lettinga, E. Barry and Z. Dogic
EPL 71, 692-698 (2005). [PDF]

"Phase behavior of rod-like viruses and virus-sphere mixtures"
Z. Dogic and S. Fraden
Soft Matter: Complex Colloidal Suspensions, v. 2, Gompper G., Schick, M. eds., Wiley-VCH Weinheim, 2005. [PDF]

2004

"Melting of lamellar phases in temperature sensitive colloid-polymer suspensions"
A. M. Alsayed, Z. Dogic and A. G. Yodh
Phys. Rev. Lett. 93, 057801 (2004). [PDF]

"Isotropic-nematic phase transition in suspensions of filamentous virus and the neutral polymer Dextran"
Z. Dogic, K. R. Purdy, E. Grelet and S. Fraden
Phys. Rev. E 69, 051702 (2004) [PDF]

"Elongation and fluctuations of semiflexible polymers in a nematic solvent"
Z. Dogic , J. Zhang J, A. W. C. Lau, H. Aranda-Espinoza, P. Dalhaimer, D. E. Discher, P. A. Janmey, R. D. Kamien, T. C. Lubensky and A. G. Yod
Phys. Rev. Lett. 93, 219902 (2004). [PDF][Erratum]

"Nematic nanotube gels"
M. F. Islam, A. M. Alsayed, Z. Dogic, J. Zhang, T. C. Lubensky and A. G. Yodh
Phys. Rev. Lett. 92, 088303 (2004). [PDF]

2003

"Surface freezing and a two-step pathway of the isotropic-smectic phase transition in colloidal rods"
Z. Dogic
Phys. Rev. Lett. 91, 165701 (2003). [PDF]

"Measuring the nematic order of suspensions of colloidal fd virus by x-ray diffraction and optical birefringence"
K. R. Purdy, Z. Dogic, S. Fraden, A. Ruhm, L. Lurio and S. G. J. Mochrie
Phys. Rev. E 67, 031708 (2003). [PDF]

"Shear-banding and microstructure of colloids in shear flow"
J. K. G Dhont, M. P. Lettinga, Z. Dogic, T. A. J. Lenstra, H. Wang, S. Rathgeber, P. Carletto, L. Willner, H. Frielinghaus and P. Lindner
Faraday Disscussions 123, 157-172 (2003). [PDF]

2001

"Shear-induced displacement of the isotropic-nematic spinodals"
T. A. J. Lenstra, Z. Dogic and J. K. G. Dhont
J. Chem. Phys., 114, 10151-10162 (2001).[PDF]

"Development of model colloidal liquid crystals and the kinetics of the isotropic–smectic transition"
Z. Dogic and S. Fraden
Phil. Tran. R. Soc. Lond. A., 359, 997-1014 (2001). [PDF]

2000

"Cholesteric Phase in Virus Suspensions"
Z. Dogic and S. Fraden
Langmuir 16, 7820-7824 (2000). [PDF]

"Concentration-dependent sedimentation of colloidal rods"
Z. Dogic. A. P. Philipse, S. Fraden and J. K. G. Dhont
J. Chem. Phys. 113, 8368-8380 (2000). [PDF]

"Enhanced stability of layered phases in parallel hard spherocylinders due to addition of hard spheres"
Z. Dogic, D. Frenkel and S. Fraden
Phys. Rev. E 62, 3925-3933 (2000). [PDF]

1998

"Entropically driven microphase transitions in mixtures of colloidal rods and spheres"
M. Adams, Z. Dogic, S. L. Keller and S. Fraden
Nature 393, 349-352 (1998). [PDF]

1997

"Smectic phase in a colloidal suspension of semiflexible virus particles"
Z. Dogic and S. Fraden
Phys. Rev. Lett. 78, 2417-2420 (1997). [PDF]